Bioinformatic engineer
Metabolic Network
CNRS, Dyliss Team
Development of a tool to reconstruct multiple metabolic networks with Pathway Tools using multiprocessing (mpwt).
Development of metage2metabo, a pipeline to reconstruct metabolic networks from microbiotas genomes and identify keystone species among them.
Use and give feedbacks for some python packages (padmet, menetools, miscoto, clyngor).
Creation of a prototype applying the Metabolic Pathway Drift hypothesis (PathModel).
Create container (Docker, Singularity) for these tools to use them on cluster.